Yes,
but the whole point is to make the transform tools work with them, just like they do in classic AT.
If half of your surface moves outside of frame, you might be able to maintain their relative position if all you need is to move the entire surface, but if you need to rotate or scale it - there is no chance you’ll be able to do it moving points separately. It was never an issue with the old AT as you could just hold Q,W or E keys and invoke transform commands - the same as you do on splines, selected vertices or the control surface itself. Now for some reason in the new AT tool the transform commands or even tools from the toolbar don’t work. I understand they could have missed it in their first or second iteration of the new tool, but it’s been over two years now.
I honestly don’t think they will ever fix it, the don’t care.
Every six months I start this thread, they tell me that everything works fine, then I prove it doesn’t, they tell me I can stil use the Classic AT - I prove them that I can’t because they broke it and still didn’t fix it - then they admit it’s a problem, tell me they added it to the bug tracker, promise it will get fixed. Another 6 months passes, a couple of new versions get released, I test the AT tools - nothing has changed.
And it’s baffling to me. I understand an ignored bug in UI or in some obscure function that doesn’t get used that often, but AdjustTrack???
I don’t think I’ve ever done a shot that didn’t require adjusting - it’s a core functionality of Mocha. And since version 2021 it’s broken and broken in a way that actually makes it impossible to track shots that were a piece of cake before.
Fixing a track was the key thing I taught artists in studios I was a super in. This was always the “aha” moment for them, that they don’t always have to get a perfect track, they just need to get the jitters right - if it drifts away, no matter, it’s an easy fix. Well it’s no longer an easy fix - if you’re just tracking transforms, you’ll get by, but if you’re tracking perspective, any attempt to adjust a track when even a single reference point is obscured ends up in a wobbly mess (a problem also visible in Marry’s live with a closing laptop screen
)
The first thing I used to ask in every new studio was “Do you have Mocha?” If not, I told them to buy it. It’s amazing how many studios didn’t even know that Mocha exists as a standalone software and how much more it can do than the one bundled with AE.
Now what am I supposed to tell them? Buy Mocha but Mocha 2020? I know it’s not sold anymore - figure it out somehow.
Studios working on AE are lucky - I direct them towards Lockdown, but others? I still direct them towards Mocha since it’s still the best out there, but now I hear constant whining that it sucks. And you know what? It does suck.
If I have Mocha 2020 available (which luckily in most studios I still do as they also haven’t upgraded yet), tracking a shot is not an issue, even if the tracked surface completely disappears on fragments of a shot - it’s a pleasure because it’s simple and it solves unsolvable problems for other software in the pipeline.
But if I don’t, and the newest Mocha is all I’ve got, because the studio doesn’t have a history of working with Mocha - then it becomes a nightmare. 15 minutes of masking and tracking - hours of adjusting the main track - just because you were 2 pixels off with one reference point that has the biggest perspective weight on it 
I’m glad the new tools work on shots where nothing is obscuring the tracked surface and it doesn’t get out of frame. I’m glad that we can use more than 4 reference points - although I’m still waiting for a tutorial for why we would actually need this since the points don’t extrapolate each others positions when moved so you still have to move all of your reference points one by one no matter if they are obscured or not 
I’m just so angry that the software that literally changed compositing for me and has been my daily work horse for probably a decade has just died, for no reason at all. What, did BorisFX fire everyone from Imageneer team?
And I’m reading the forums, new users come here with difficult tracks, ask for help, and yeah, your track is difficult, it’s going out of frame, gets obscured a lot, suddenly makes a 90 rotation in two frames - it’s not a simple static shot.
If you have Mocha 2020 you can fix it in 5 clicks, if you’re on Mocha 2022, well you have to be patient, turn on planar grid, turn on trajectories, turn on 8x8 Checker to see what happens with the insert while you’re nudging the reference points. And prepare to go over every part of your clip 10-20-30 times to check if the insert is not overstretching or popping. How are we supposed to help that person - he’ll just give up.